If I understand you correctly, this issue began after the IS pods and new air dam were installed and did not exist prior. So I’m thinking this problem was induced, and is not a clogged jet.
A bit of an update:
In the words of Pogo: "We have met the enemy, and he is us..."
Got the pods, intake valances (Kuryakyn) and linkage covers off the bike then started poking around with an inspection mirror. Intake runners all looked solid. Next up were the vacuum lines, and...oh, wait - what's THAT? The carbs currently on the bike are CA-model units, and one of the secondary evap lines (on the #1 carb, right next to the air dam) had somehow waltzed off its nipple.
Any fans of "My 600lb Life" on the board? You'd get a renewed sense of appreciation for Dr. Now and his gastric-bypass surgery procedures through an abdominal hole if you watched me reattaching the line with hemostats and other surgical tools. Suffice it to say that space is a little tight.
How the line came loose is a mystery. The only thing which comes to mind is interference from the air dam as I was positioning the carbs on the intake runners, and it was simply pulled off via friction.
A road test with the gal pal aboard last night showed the rough spot lower in the power band - like, right off idle - and a lot narrower in duration. This is exactly what I'd suspect upon syncing a carb with a vacuum leak. I'll take the right-side pod off again this week and sync #1 to #3, which should make the problem disappear entirely.
Question for the CA vs. non-CA sake of argument:
I love clean air and a healthy planet, but I also love motorcycles with a minimal amount of potential failure points. I'm going to get into the airbox area again next spring, when I install a Dan-Marc shutoff and convert the petcock to a manual setup.
Should I de-CA the emissions plumbing at that point? Meaning, the evap canister, valves and the secondary lines will go away and the 6 carb nipples will be plugged. My thoughts on the PAIR valve setup is that as long as it works and I can get spare parts I'll leave all of it intact, but a complete de-smogging will occur at the point I can't.