I might be a bit late to the game with this but I replaced the joiner tube o-rings last month (bought a 98 std that had sat outside for 4 yrs, o-rings crumbled when I pulled the tubes

).
I found that after removing the center linking bar, the two brackets, and the cable that connects the banks for choke it was easiest to just pry one carb off at a time. From there pull the joiner tubes out, change the o-rings and swap from steel to plastic dowels then put everything back together before starting on the next carb.
Line up the tubes(make sure they point towards the center in the correct alignment, they won't spin 360 once together), get all the springs in the right spots, and reconnect the carb bank by putting the 2 long bolts back through the whole bank and tightening them back together evenly. Really watch that the tubes stay aligned when you do this, it would realllyyy suck to crack one of those tubes, might not be a bad idea to put some wd-40 or something safe for the rings on to make sure the rings don't snag going in.
Once seated the o-rings and new dowels will hold the finished carb on fine while you operate on the other side. You can pull the bolts back out and start prying the other carb off. I used muffin tins to hold all the little pieces in between and found it much easier to keep track and to re-assemble when doing just one set of tubes at a time.
To pry apart I used the wooden handle of a hammer between the carbs to start (very gentle, slow and careful) then put coins in where the long bolt runs through and gave them some gentle twists, starting with dimes and working up, used loads of penetrating oil too. I had the luxury of not worrying about little scratches. The bike looks pretty rough already from sitting outside and maybe encountering an angry girlfriend (gauges busted, engine covers keyed, much spilled dot 4). Couldn't do much to make it look worse. Some sort of plastic shim would no doubt be safer than coins.
Might be a good idea to inspect the short air cut-off lines and possibly change those o-rings while it's already apart, mine were splitting and I had to throw in some new vacuum lines. Much easier procedure with the carbs apart.
At any rate this got me through it and in the end my sieve of a carb bank is leak free!