Do you follow the recommended procedure of placing the stem at the 6 o'clock position and blowing a bit of air into the valve stem before taking an air pressure reading? This clears the stem of any beads as otherwise there is a chance trapping a bead(s) in the schrader core. I do this and haven't yet (knock on wood) shared your experience.
I have been doing it that way. This is a problem that has developed in the last few months, so perhaps it is a moisture issue or something.