Welcome to the club...
Having changed my coolant at least 5 times now, it has never taken more than about 3 1/2 quarts to refill, including the reserve bottle.
The capacity in the shop manual must be based on a complete drain, as in disassembly of the engine. I think the normal drain and fill process always leaves about 1/2 quart residual that can't be drained, even with the bike vertical or leaned to the right.
You did good....and will have no problems.
except that you have too much in the overflow tank. hoser
i checked out reserve coolant tank after taking a couple of rides and it was OK, just below the upper level mark. That mark is only a little over 1/2 way up the tank, so it seems like there is plenty of room for extra coolant that may go up from radiator.