With only 3500 miles on a 16 year old machine I am with sandy on this one probably low speed jets.
3500 in 16 years what is that about 6/10ths of a mile a day average.
Hell I have ridden 5k in two weeks

I agree with you Bighead, but, let's just do one job at a time, so if for some reason it doesn't run right, we know where to go 1st.
1. Do the hoses.
2. Do the carb clean, Seafoam or something along that line.