I had a 04 FJR and it was an Awesome bike. I got rid of it because it had a very bad Heat Issue. Heat from the engine would come right up into your crotch and fry your boy's.
Other than that it was a spectacular machine, and since 2006 they have revamped the front air dam to push that heat away from your crotch. So if your looking for one make sure it is an 06 or newer.
I put a set of risers on mine and sat in a straight up position, bike has endless speed at the flick of the wrist. I had both a Valk and FJR at the same time, and it was the best of both worlds.
I am always looking for a good deal on another one, when I find one, I will buy another as well

Well, got a 5th cycle yesterday and unfortunately not a 2006 on up yamaha fjr1300 but a MINT (looks brand new still) 2005 blue one. I sat, etc. on a few kawi concours and too tall a seat height for me like 1 inch higher than the yami and felt more top heavy/not as flickable. Will see if the HEAT of the summer is an issue since like you said, the 2006 and newer fjr1300's fixed the heat coming at you but right now not 90 degrees outside so HEAT is good. Plus, 90% of my driving is rural country doing 60mph not much in town driving so heating issues mostly in town my guess will not be an issue I think???
The deal was too good to pass up 4K with extra goodies thrown in ONLY 17K miles MINT (I am afraid to sit on it since hate to put a first scratch in it for first time since is that NEW looking-LOL). Looked at 2 newer fjr1300's at dealers (and a kawi concours) and one 2009 was 6200 in price 46K miles, the other 2012 over 8 grand 26K miles, both out of my price range and not pristine looking and one fired up had issues. Sure beats the other identical 2005 yami fjr1300 we saw local with almost 73K miles even though was in good shape, for 500 bucks more from 3500 to 4K is well worth it for 55K less miles.
I met a guy at dealer yesterday who wants to sell his 2003 yami fjr1300 with 132K miles he still said will ask 4K for it so even though not worth it am sure, 4K for a 2005 like new only 17K miles ran great dealer would sell for 6K and private party easily 5K I had to snatch it up before someone else stole it.
Even though 2005, with only 17K miles was a cream puff and ran like new all the way home 150 miles one way. Has a 6.6 gallon tank filled it up 150 miles away and still had about 1/3rd tank left so over 200 mile trips will be no problems ran it home interstate doing 80+ mph. Man, that think is FAST and SMOOTH and handles super awesome the 650lb. weight feels like 300lbs. to me.
I think the wife is going to block me from craigslist for awhile.....
