I also used rubber vaccum plugs when I did my Desmog rather than use the OEM plugs and noticed that they are deformed (as in sort of sucked in).
I've desmogged in 2003 (or 2002...) and have then replaced the OEM vacuum plugs with generic rubber ones. They have never caused a problem.
Did you check your fuel hose (from the fuel tank to the T at the carbs)? It might be kinked (this has happened often on many Valks).
Hope this helps.