if you are building a space shuttle then i would worry about it (maybe) if you are building targets -- what do you care about the "properties" if it bitches -- SHOOT IT !
Well, I would like for it to hold up properly. I may sell some of these if it works out ok.
If you don't mind taking a little more time to cut it, an abrasive chop saw might be a better choice. A plasma cutter might anneal a tiny area next to the cut, but shouldn't affect the majority of the plate.
Well, its hard to make round shapes with a chop saw. I plan to cut some round plates for a plate rack, some pepper poppers, parts for a dueling tree, a texas star, and a polish plate rack. Then some IDPA sized targets and some plates for long range rifle work.