How full is your tank?
I had the same problem when I put in the fuel line loop, electric fuel valve and metal fuel filter. Bike wouldn't get fuel once it got much lower than half a tank, not even on reserve. Removing the fuel filter solved the problem for me.
I think you're onto something!

The first time this happened I was about to go and get some gas for the next days ride. Second time, same condition; low fuel.
I put in the fuel filter because I had installed the quick disconnect and was concerned with crud entering there when disconnected. By removing the fuel loop and the greater flow area of the Pingle it seems to have corrected the problem of poor fuel flow as my tank is still really low on fuel.
By the way, with the Pingle it's much easier to simply pull off the fuel line (no vac line) at the petcock as there's much more room for fingers and tools now.