"To each his own."
I've replaced the pads many times on my Valkyrie and have yet a problem.
Simply push the pistons back in the caliper and install the new pads. That's all I do.
I don't believe this process will contaminate anything especially when considering a low mileage bike.
I do keep an eye on the condition of the brake fluid as a clue to whether or not more attention needs to be given the particular hydraulic brake system.
So far I've not changed the fluid in my front brakes or clutch, it's a light amber color and all is working extremely well.
I have run new fluid through the rear brake system however. i think the condition of the fluid in the rear is more easily contaminated since the reservoir is close to the pavement and subject to more extreme weather conditions, especially rain and water from the roads.
I have not yet done any work to the calipers/pistons since buying the bike new in 2000 / 115k miles.
Same with the master cylinders.
***
Hi Ricky... weren't you happy with letting your fork seals leak out all the fluid without
doing anything about it, or am I thinking of someone else?
I don't know how many miles my bike had on it when I got it (odometer read about 25K), but
when I did, I just mashed the nasty pistons back in the calipers when I did my initial fluid
change and called it good. Some months later my rear brakes quit releasing, and when
I took the caliper apart, I attributed the problem to not doing a proper job of cleaning stuff
up. That's my story and I'm sticking to it...

I take my calipers apart and clean everything now, whenever I change pads... it is not hard.
I often ride for hundreds of miles in a day, sometimes for several days in a row. I think my
brakes work good. It makes me happy.

-Mike