I have been working on valks since 2000 but this one has me stumped. I am working on a friends interstate trike and it is running on three cylinders, right side only.
A little background. Two other places besides me have worked on this over the last 3 years. The first place tried to replace the clutch but never tightened the main clutch nut, nor staked it like it should be, and it backed off and the clutch plates came apart and plugged the oil pick and the debris and su
ch blew the motor. The second place replaced the motor with a used one off ebay but completely screwed up the wiring. The side cover would not go back on and there was wires everywhere. I found 3 battery cables

2 were ground cables and neither of those went to the block where the should. One was pinched behind the alternator cover against that bracket and one was connected behind the ignition switch. The alternator cover loop broke because it is just plastic and they tried tightening that down to much. The alternator was not charging and I saw there was nothing connected to the white exciter connector. I actually had to pull the alternator because I could not find the harness. It turned out that they either cut or broke the harness and it was completely missing and not plugged into the alternator.
I get that all straight and fire it up. It has sat for over a year as I would get depressed while working on it

It was not running on all cylinders so I figured old fuel in the bowls (the tank was off since it came to my house) so I pulled the carbs and rebuilt them. No joy.
I checked the compression and all are around 170 psi or so. The left side is not firing. I verified that using a laser thermometer, pulling the plug wires with no rpm change, etc. I have another motor in my garage that I know was running, so started swapping parts.
I swapped the coils and wires even though a coil fires one cylnder on each side, but just in case there really as a fluke. No change. I swapped the EMC. No change. I check the valves on the left side and all are good.
I verified spark on the left side by grounding the plugs and seeing the spark. Also my meter with an inductive pickup reads the correct rpm when connected to #2, #4, or #6 so it also is seeing spark. I also pulled and swapped plugs. The left side plugs were wet so it appears there is fuel. Pulling a plug wire on the right side has an immediate drop in rpm. Doing the same on the left side has no effect.
A buddy suggested that maybe the exhaust was plugged with a mouse nest so i drop the exhaust this moring. No change.
Initially when I checked compression on the left side, they were low. My friend suggested maybe the rings were stucl. I did a wet compression test and the compression came up. #2 was initially about 60 psi so at the time I was thinking bent valves. But the next week when I checked the compression again, they all were at 170 dry and about 220 when I did a wet test. So whatever made the left side low to begin with changed .
One other thing. I have the fuel tank off and have an aux fuel supply hitched up. I also pulled the airbox, rather I did not re-install the airbox after pulling the carbs a second time just to recheck my work (they were fine). I tried spraying starting fluid in the intake's to see what it would do. On the right side the starting fluid makes it too rich and there is a pronounced rpm drop while the cylinders clear their throat. On the left side, it is different. There is a slight rpm increase and some popping and a backfire. Totally different behavior between the working right side and the non-working left side.
I am going to swap out the pulse generator next. I am running out of things to check and swap however and am looking for any ideas. I may pull the head and check it. I did check the cylinders the best I could with a bore scope and the pistons look fine with no damage that I can see. The valves also look ok but I cannot verify their seating but the compression test says that they are.
It almost seems like the left side is completely out of time and firing on the exhaust stroke and not the compression stroke. I mean I see good compression, wet plugs to indicate fuel, spark from multiple tests. The damn thing should be working.
Any ideas as I am at a loss?